PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36867.3.p
Common NameBRADI_3g36867, LOC104583714
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 311aa    MW: 35541.2 Da    PI: 8.9983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36867.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05213233121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       +kC++C+  +++ks+L++H++
  Bradi3g36867.3.p 213 WKCGICNANCTSKSDLESHLQ 233
                       58*****************96 PP

2zf-C2H211.60.00083274294222
                       EETTTTEEESSHHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                       kC +C+ s+s+ks+L++H+r 
  Bradi3g36867.3.p 274 KCIICNASCSSKSDLESHLRG 294
                       6779***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.86E-8143183No hitNo description
SMARTSM004515.1E-4149183IPR003604Zinc finger, U1-type
PfamPF128743.7E-7152176No hitNo description
SMARTSM003550.19152176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154176IPR007087Zinc finger, C2H2
SuperFamilySSF576676.12E-10202244No hitNo description
SMARTSM004514.5E-5210244IPR003604Zinc finger, U1-type
PfamPF128747.2E-9213237No hitNo description
SMARTSM003550.098213237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215237IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-9255306No hitNo description
SMARTSM004510.12270304IPR003604Zinc finger, U1-type
PfamPF128749.6E-8273297No hitNo description
SMARTSM003550.0084273297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280275297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEFARRAAAR ANADDIDGIP IPPPYAKMTV EALRQELLQE DIRQQIIVAE LAERRKLEAE  60
FERERGLHGD LGARLPQIIM PHRDTSPLPL GEPLVTTAPK PRRSVKDRIE EWYQPPWHRR  120
AEEVDVSIDA AGLHTKTLSG VKRKRTAETL LWVCSICNVT CHRETDVQSH LRGRRHQEET  180
ENQQREGRDI EAKLHEKKAP QLADKNQKPV SRWKCGICNA NCTSKSDLES HLQGRRHLKN  240
VENQQRDGKD IEAKPHENKA SQLDKNQKPA SIWKCIICNA SCSSKSDLES HLRGRRHHWN  300
IQAQRLEGSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755812.10.0PREDICTED: uncharacterized protein LOC104583714 isoform X1
TrEMBLI1I7E20.0I1I7E2_BRADI; Uncharacterized protein
STRINGBRADI3G36867.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1416655
Representative plantOGRP897322